Heath Patterson

The pyramids likely fail because you need more VRAM on the GPU. You may be able to get them to fit in memory if you change the ```FixedInternalImagePixelType``` and ```ShortInternalImagePixelType```...

Hi @nrpark, I'm not sure this issue is directly related to SimpleElastix, but may be more related to my software package, which admittedly, is quite out of date. That said,...

Strangely, I've had some luck with `(Metric "AdvancedMattesMutualInformation")` but in a 2D binary mask scenario. One thing to be wary of is `AutomaticTransformInitialization` and making sure it is **OFF** as...

You can use a [SimilarityTransform](https://elastix.lumc.nl/doxygen/classelastix_1_1SimilarityTransformElastix.html). Link is how to use this.

@tlambert03 Can confirm this works with the test above locally.

> Hey @NHPatterson what is your hopeful timeline on getting this in? I am a bit busy but can review this weekend. >> I should be able to do something...

> Thanks for contributing this! I have a few comments regarding structure 🙂 Thanks for the careful review! I've done as you suggested for all the issues.

> SCN containing Z-stacks are not supported yet by tifffile. Can you please provide a sample file? I'm not able to find one publicly unfortunately. I have a Leica SCN400...

> Overall, this all looks good. Some minor comments at specific lines, my high level comment is that it would be great to add a few more comments. Largely around...

> Overall, this all looks good. Some minor comments at specific lines, my high level comment is that it would be great to add a few more comments. Largely around...