Mike Lloyd
Mike Lloyd
I am trying to run PacBio data against a mouse genome, and am seeing the following error `Error in 'ngmlr': double free or corruption (!prev): 0x00002aaed8eeb910`. I am running the...
I found another place where `--sam-append-comment` is not writing correctly to the output. This time when using the `--passthrough` option. The output is as follows: ``` A00739:517:HM2C7DSX2:4:1339:6551:28213 16 chr4 118734914...
## Check Documentation I have checked the following places for your error: - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core/sarek pipeline documentation](https://nf-co.re/sarek/usage) ## Description of the bug We are running...
I am running HMMRATAC Version 1.2.10-0 from conda installed into singularity image with conda 3 base. Trying to call peaks on mm10 based data. Here is the command that is...
Can you clarify the following: `indel_header.addFormatField("GQ", "1","String", "Genotype quality (currently not supported. Always 0)");` There are non-zero GQ values in the final VCFs. I am confused by the header statement.
I am trying to use your tool with GRCm39. I have been able to successfully build with m38, and GRCh38. However, for GRCm39 using ensembl v109, an error is thrown:...
Trying to make the getErrorProfile tool. Getting the following when I run `make` ``` miniconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: getErrorProfile.o: in function `getErrorProfile': getErrorProfile.c:(.text+0x5b3): undefined reference to `phred33ToPhred' miniconda2/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: getErrorProfile.c:(.text+0x5d9): undefined reference to `phred64ToPhred'...
I have a workflow that conditionally sets memory and wallclock based on an input value e.g., `val(workflow_flag)` An example memory statement in the module would be: `memory = {(workflow_flag) ==...
Per @ismirsehregal in https://github.com/datastorm-open/shinymanager/issues/198#issuecomment-2765726221, a minor fix is made to `R/module-auth.R` to remove the duplicate input ID, and avoid error popups being flashed to the screen on authentication.
I am trying to run Conpair on a set of data. I am not sure of the origin of the data, but I am getting a key error in the...