MichaelFokinNZ

Thanks guys! I will analyse my data more precisely (new FastQC is awesome!) and provide you some files.

my 5c for docker - it is great and worth supporting, because this way you can easily run it on HPC (Singularity in my case) without rigorous installation

> This version of CodingQuarry works : https://hub.docker.com/r/robsyme/codingquarry/dockerfile @lalalagartija have you managed to get this version of coding quarry to your funannotate singularity container?

Hi, I am getting exactly the same error with two versions tested **4.0.9** and **4.1.0** on Centos7 NeSI cluster (looking for help from eng support there as well). `error reading...

please find the content of output folder below. three dirs still there  ``` -rw-rw----+ 1 username project 0 Sep 27 09:32 containees.txt drwxrws---+ 2 username project 4.0K Sep 27...

upd: I tried different dataset (also PE Illumina + Nanopore) - the same error...

these realated issues? https://github.com/alekseyzimin/masurca/issues/313 https://github.com/alekseyzimin/masurca/issues/239

Thank you! I have a gut feeling that it might be related to high coverage (>100x) ONT dataset (both I tried). Can you recommend any available/reproducible SRA dataset (Illumina+ONT) to...

Hi Aleksey, with NeSI's (NZ) cluster support help we figured out the cause of this and I run your dataset successfully. That is perl common issue with ssh sessions opened...

[2jason.txt](https://github.com/hyphaltip/genome-scripts/files/2264926/2jason.txt)