Michael B. Currie
Michael B. Currie
[I come to you from the tracker-commons open-source project.](https://github.com/openworm/tracker-commons) Using the [following 57 MB JSON file and 7 KB schema file](https://drive.google.com/drive/u/0/folders/0B9dU7zPD0s_LWWlKeGcwT3N4VWc), the following code takes upwards of 70 seconds to...
### 🐛 Describe the bug If I repeatedly run the following script, it will fail before reaching `"End"` most of the time. About 75% of the time I run the...
As I am debugging the specifications one thing that is constantly coming up is discrepancies between how the features are described in the CSV files that the Specs class uses...
https://github.com/openworm/open-worm-analysis-toolbox/blob/master/examples/WCON%20demo.py
From @ver228 > A quick question. I am documenting the features however I found in this document ( https://github.com/openworm/open-worm-analysis-toolbox/blob/master/documentation/database%20schema/Features%20Specifications.xlsx) that locomotion.foraging_bends.amplitude should have units of micrometers. > > However, for...
Right now our code breaks down features by "category": - Morphology - Locomotion - Path - Posture But these are really just labels we attach to group the features for...
@Eviatar has been working on the original Segworm Matlab codebase over the past 3 years while we've been working on a port of his code. This means the functionality of...
Line 52 of `WCON demo.py`: ``` 'skeleton': bw.h_dorsal_contour} # DEBUG ``` ... uses the dorsal contour in place of the skeleton, because of an error in calculating the skeleton from...
[Copied from @JimHokanson 's comments, so this remains an open issue.] > Some thoughts on going forward: > 1) The new code needs documentation. > 2) Might populate WormFeatures with...
Some features are named ambiguously or inconsistently across the repo. This problem is inherited from the original Schafer Lab work. To fix: https://github.com/openworm/open-worm-analysis-toolbox/blob/master/documentation/Yemini%20Supplemental%20Data/ReadMe.rst (and also in several other places) -...