Doksuri2305

EPI_ISL_15293815 It's an imported case from Chongqing. EPI_ISL_17809521 It seems to be monkeypox from Hangzhou?

KP.3.1 with G22599T（S:R346I）singlet（1seqs from France）

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KP.3.1 (G15372T, A19722G) > ORF1a:Q998H (G3259T), T5773C, C4586T, G19962A, **S:R346I (G22599T)** EPI_ISL_19139125,Collection date: 2024-04-04,France GISAID Query:G3259T, C4586T, C7113T, G15372T, G22599T, T22928C, G24872T https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_16cb3_98f130.json?f_userOrOld=uploaded%20sample 

The other JN.1 with S:S31F （45seqs）

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GISAID search: C21654T,C24904T,A7842 https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_27192_a389a0.json?f_userOrOld=uploaded%20sample&label=id:node_2351637 

KP.3 with C18490T(ORF1b:P1675S)(128seqs)

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KP.3>**C18490T（ORF1b:P1675S/ORF1ab:P6076S）** Query: C23039G,C18490T  EPI_ISL ID： EPI_ISL_18983458, EPI_ISL_19008161, EPI_ISL_19020950, EPI_ISL_19023191, EPI_ISL_19023265-19023266, EPI_ISL_19026710, EPI_ISL_19027460, EPI_ISL_19027470, EPI_ISL_19033174, EPI_ISL_19036078, EPI_ISL_19036816, EPI_ISL_19040908, EPI_ISL_19042638, EPI_ISL_19049367, EPI_ISL_19049412, EPI_ISL_19049457, EPI_ISL_19053554, EPI_ISL_19054834, EPI_ISL_19055595, EPI_ISL_19056053-19056054, EPI_ISL_19057210, EPI_ISL_19062563, EPI_ISL_19062599, EPI_ISL_19062903-19062906,...

Small lineage monitor:KP.3.3 one singlet with S:A475V （1seq from Thailand）

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**KP.3 with Orf9b:P3H ( proposed in #2579) got one singlet with S:A475V （1seq from Thailand）** KP.3 >C25006T,G28884C(N:R204P) + C28291A(Orf9b:P3H) + **C22986T(S:A475V)** GISAID query: C7113T, G17334T, T22928C, C22986T, C23191T, G24872T, C25006T,...

JN.1+C23054A ( S:R498R) with a sub branch with S:F79L -72 seqs

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Edited: JN.1 > C23054A Query : C23054A ,T3565C, C12815T Samples: 58 Countries: 10 countries mostly China, Singapore and South Korea plus further samples from under-sampled areas including Philippines, Vietnam, Thailand...

JN.1.4.5(ORF8:S103L) with ORF1ab:T708I,S:S60P（23seqs,mainly found in Canada）

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GISAID query:C2388T,T21740C,A28877T,G28878C EPI_ISL_18919532, EPI_ISL_18919565, EPI_ISL_18958470, EPI_ISL_18974537, EPI_ISL_18974606, EPI_ISL_19012473, EPI_ISL_19012651, EPI_ISL_19027144, EPI_ISL_19027265, EPI_ISL_19027316, EPI_ISL_19027347, EPI_ISL_19027458, EPI_ISL_19043955, EPI_ISL_19043996, EPI_ISL_19044084, EPI_ISL_19044177-19044178, EPI_ISL_19044258 https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_3aa31_9f9c80.json?f_userOrOld=uploaded%20sample&label=id:node_5570142 

KS.1+S:R190S ( 28 seqs, 5 countries including Russia )

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**KS.1(JN.1.13.1.1)>**S:R190S**(G22132T) Query:`T22928C,G22132T,C26894T,C25680T,-G28001T,-C19716T,-T14541C,-C344T,-C6555T,-C6310T,-A1674C,-T1978C ,` (edited on September 12) Samples: 24 Countries: 5 [Russia, Switzerland (GBW), France, Italy(GBW) ,England] _The 22N sub-branch should be not a sublineage of this and **it has...

KP.3.2 with S:S680F（41seqs, 4 countries）

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KP.3.2>**S:S680F(C23601T)** GISAID search:A2611C,C22858T,C23601T 

NB.1.8 with S:T95I,ORF1a:S1102G/P1158L ( 4seqs，2place)

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I discovered a new lineage while checking the sequence.This is a branch about NB.1.8, which was uploaded in two batches by New Zealand. NB.1.8 >> **S:T95I,ORF1a:S1102G,ORF1a:P1158L** GISAID Query:` A3569G ,C21846T,G2095A...