Maximilian Stammnitz

icon indicating a website link http://www.tcg.vet.cam.ac.uk/

icon company University of Cambridge icon location Cambridge, U.K. icon location Geneticist. Exploring contagious cancer cells and Tasmanian devil conservation through bioinformatics. @DevilsAdvoMax

Results 5 comments of Maximilian Stammnitz

Is it possible to output the source of reads of each kmer

Hi @bzvew and Guillaume @gmarcais, Following up on the request above: we have just used the subset k-mer counting and are pretty happy with the results. Also pulling out the...

branches_attr_by_labels 'type' options

Hi Tal, I was thinking of an example like this one: ![example_case](https://cloud.githubusercontent.com/assets/12943081/24959264/2c69bb12-1f8a-11e7-88b1-10dde2794297.png) Ideally, you should be able to opt out of highlighting the branches between root and MRCA.

branches_attr_by_labels 'type' options

Hi @talgalili, I will probably get to this in the coming week.

Installation error

Hi, >> install.packages('dendextend') raises the above error for me. >> version platform x86_64-apple-darwin13.4.0 arch x86_64 os darwin13.4.0 system x86_64, darwin13.4.0 status major 3 minor 2.2 year 2015 month 08 day...

Base-specific Phred score filtering/output options in AnalyzeSaturationMutagenesis

Hi @tedsharpe, A quick follow-up question on this – how does the function currently handle the Q-scores from overlapping portions of paired-end reads? @BenjaminWehnert1008 noticed that read pre-merging and dual...