Matt Ralston

Expects().to(raise_error(TypeError)) didn't detect my type error.

2

Hello, I have a simple class with a method called foo. I am testing with the expects 0.8.0 framework in mamba. test.py ```python class Test: ... def foo(self, x, y):...

I have a function which takes a named argument (for example, the factorial function serves fine) mymodule ```python def factorial(n=1): if type(n) is not int: raise TypeError("mymodule.factorial() takes a single...

Hello, I'd like to start using nuxhash in my spare time to acquire some btc. I've installed the program nuxhashd and the nuxhash package in general on Arch Linux from...

Jellyfish python bindings don't support fasta or specify what format they do support

3

The RuntimeError doesn't make sense. ``` bash >cat test.txt >hello ACTGACTGACT >python scripts/jellyfish_kmers.py --infile test.fa Traceback (most recent call last): File "scripts/jellyfish_kmers.py", line 40, in main() File "scripts/jellyfish_kmers.py", line 26,...

Jellyfish ruby bindings fail to build

2

``` bash >wget https://github.com/gmarcais/Jellyfish/releases/download/v2.2.5/jellyfish-2.2.5.tar.gz >./configure --prefix=$HOME/home --enable-ruby-binding checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane......

Similar to #94 , rather than AuthFailed I'm getting complaints about "session down" when my key is protected. Standard git clone of the same repo works fine and triggers password...

Hello, I checked out release 5.0.2 branch and tried to build the Docker container. I noticed that the setuptools upgrade fails. ``` Step 4/7 : RUN apt-get update && apt-get...

[Enhancement] Data libraries point to S3 location

3

Hi everyone, I have an idea for an enhancement to both Galaxy and bioblend where data is hosted remotely on an S3 account that the Galaxy admin has access to....

samtools sourceforge download fails from open-uri: 'redirection forbidden'

5

Error building with ruby 2.1.10 due to open-uri. The mkrf_conf.rb and Rakefile both contain http sourceforge urls. These fail to download properly thanks to open-uri. I am surprised this wasn't...

Supported ruby versions undeclared in gemspec, ext/Rakefile unsupported with ruby 2.4.2

1

To avoid the Open-URI redirection issue described in #67, I tried installing the 2.3.0 gem for ruby version 2.4.2. In this case, the redirection is successful, but the rake still...