Matteo Schiavinato
Matteo Schiavinato
Thanks for the fix! Worked perfectly for me.
Maybe a stupid question but do you have all the necessary dependencies installed and in the $PATH?
Same issue here. In my case it is stuck here: `[client] HTML Path 'undefined'` But I don't know how to fix this.
Hi, I'm having the same issue. My kraken2 database was built with the same version that bracken in trying to use (2.0.9-beta) and regardless of how much memory and threads...
I recently found myself in dire need of this feature. Is there any step forward for it?
I just encountered the same error when working on the human genome.
As a simplification to what @mihkelvaher has posted, you can also run the following command: ``` find -L library \( -name "*.fna" -o -name "*.fa" -o -name "*.fasta" \) -exec...
Thanks for the quick answer! With your `sed` command I saw better. It's not processing the orthogroups correctly for some reason (memory related?). Here is an example: ``` Running HMMs...
These are the genome sizes! ``` 2.3G genome_1.fa 1.2G genome_2.fa 2.6G genome_3.fa 2.1G genome_4.fa 2.8G genome_5.fa 1.6G genome_6.fa 2.8G genome_7.fa ``` Thanks for this chance. I'd like to try it...
> What was the input problem, and were you able to fix it? Nothing script-related, I didn't index the FASTA files. I was more concerned with finding 28 ghost processes...