Matt McLoughlin
Matt McLoughlin
Martin, thank you for writing this exciting project, I'm excited to learn more about the implementation. Happy to help with this build pipeline - if you can break this into...
As a start, here's ChatGPT's attempt at breaking up the above: - Deprecation of distutils: Create an issue that addresses the need to replace the deprecated distutils/setuptools package that the...
I have the same issue. @yonzhan any ideas on how to fix or the root cause? Windows 11, wsl2, Ubuntu 22.04.3 LTS
Thanks @lbergelson for looking into this. Users can definitely squash the image after pulling, and then push it to their private registries - that's the best workaround here, so this...
Thanks @lbergelson , I took a first pass at writing a [draft PR](https://github.com/broadinstitute/gatk/pull/8686), but after thinking about what you said, it's likely easiest to just wait until `--squash` is added...
@lbergelson maybe using Docker-in-Docker would allow this? https://github.com/MattMcL4475/gatk/pull/1
@patmagee what are your thoughts on the best way to handle this?
A few more clarifications to discuss: 1. If `tesOutput.type` is not specified, do we assume it defaults to `FILE` ? 2. File specified with trailing slash: ``` tesOutput.tesFileType = "FILE"...
@bentsherman we have a proposal to remove `path_prefix` , can you take a look and see if you agree? https://github.com/ga4gh/task-execution-schemas/pull/195