Ma

plot_phylo_heatmap

1

Hi, TengGao @teng-gao I have a about "plot_phylo_heatmap":  Why is there three genotypes when cut=1? And why aren't the colors of the Genotype coming together？ Thank you for reading

gexp_roll_wide

1

Hi, TengGao@teng-gao, I am very interested in your research, but I have encountered some problems. When I use Numbat$new (), the resulting R6 object gexp_roll_wide and hc are empty, and...

Hi, @akdess Thanks for this great work. Recently, When I tested CaSpER, I didn't know how to draw a phylogenetic tree.   Whether to use the plotSCellCNVTree function to...

T cell data but there are many BCR

4

Hi @mourisl , Thank you for the great tool! But I encountered some problems in the process of handling the data. I entered a bam file containing 166T cells to...

Numbat assigns clone coloring in Panel.png not uniquely

1

Hi @teng-gao , Thanks for building this tool, it's pretty cool! The issue I'm facing is that the clones are not converging into single colors on my Y-axis despite being...