Marius Lange
Marius Lange
We might have to modify the links a little
I'm running `g.fit(cluster_key='clusters', n_states=[4, 12])´on a GPCCA estimator object with slepc and petsc installed and running. On verbosity level `cr.settings.verbosity = 2´, there is a **lot** of output: ```pytb Computing...
I'm trying to load a VelocityKernel from an AnnData object that contains a precomputed transition matrix. However, it doesn't led me and gives an incomprehensible error message, which I think...
At the moment, our estimators have a `backward` mode which is indented to study the dynamics of the "backward" Markov process. I would change the interpretation of this and unify...
... This could be part of the [kernel tricks](https://cellrank.readthedocs.io/en/stable/auto_examples/kernels/compute_kernel_tricks.html#sphx-glr-auto-examples-kernels-compute-kernel-tricks-py) example.
... If you show me how to do this for one case @michalk8 I can do it for the others. Thanks!
... At the moment, our API menu looks like this:  That's not very nice, the list is way too long. In contrast, scVi-tools displays...
- [ ] Additional function parameters, change functionality or change defaults? - [ ] New estimator in `cr.tl.estimators`? - [ ] New kernel in `cr.tl.kernels`? - [ ] New gene...
As we saw recently when we were debugging @WeilerP's data example, it makes sense to have a utility to learn something about transient and recurrent classes in a Markov chain....
Setting the random seed does not lead to exactly reproducible results, you can easily check this in an example, just set the random seed, run palantir twice and compare the...