Marh32
Marh32
Thank you so much for your reply. I was processing the results of a lastz run with pairwise alignment, and then ran axtchain, chainPreNet, chainNet, and netSyntenic, but after running...
tDb - database to fetch target repeat masker table information,I would also like to ask you about the specific format of database.Thank you very much
Yes，I'm reproducing the primate chains and nets.So if I want to complete the chains and nets step according to my own sequencing data, can I skip the netClass step and...
Thank you very much.
Ok, thanks for your reply.
Hello, I would like to ask how to set the version of snakemake from 8 to 7.23, thanks in advance for your help.
This may be caused by the incorrect version of LTR_Retriever. When I install edta with mamba, LTR_Retriever in 2.9.4 will be installed by default.Maybe you can update the retriever version...