Marcin

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@vanushkin please look at `tabulizer` R package that deals with it

My intuition is that those pdfs can't get read becuase of the printing mechanism that created those files. In my case the text in mine pdf in not-selectable and from...

It can be done in the source code of `ldavis.js` or you can put ldavis inside iframe and specify width and hight for that iframe

Is this helpful? http://stackoverflow.com/questions/25819539/how-to-add-an-interactive-visualization-to-r-markdown http://bl.ocks.org/ramnathv/raw/8084330/ I googled: `including visualization in iframe in r in rmarkdown`

Talking about random modification of javascript code you should pay attention to lines https://github.com/cpsievert/LDAvis/blob/master/inst/htmljs/ldavis.js#L39-L53

I have done this for you, so you don't have to bother. I have done this for future users, not for Biocondcutor :) as I believe you have done this...

@Siobhanmcc did you try running reticulate::py_config() ? Is it still valid issue or can we close?