Antoine Limasset

icon indicating a website link https://malfoy.github.io./ icon indicating an email [email protected]

icon company Bonzai / CRIStAL icon location Lille icon location CNRS researcher     Université_Lille/CRIStaL/Bonsai.

Results 7 comments of Antoine Limasset

Use MPHF

Ok it is self-explanatory, was just afraid of template use. But is it normal that a key value of 0 result in an infinite loop "Hypergraph is not peelable" with...

std::length_error / core dump when running with example.dot file

What was input.dot ? I added an input file, tell me if it do not works properly

Missing sample.dot file

I added the example input file, you can run $./bcalm input just after $make

possible optimizations

-not an optimization but the name of the repository could be bcalm2 -zip IO

Re: Error 127

I got the same error. Try to run the run the run-fermi.pl script with the option -e ./fermi (or put the fermi binary into your path). The makefile should found...

much slower than the paper claimed

Dear user, I'm afraid that the chosen kmer size could be too small, generating a lot of irrelevant hits. Can you try with a larger kmer size (21 or 31)...

Comparing two sketches constructed from --parse-by-seq

Can you give me a sample command line ? In a simpler example: dashing2 sketch -k 31 -p 63 -S1000 -F fof1.txt -o sketch1; dashing2 sketch -k 31 -p 63...