Hao XIANG
> I am experiencing the same issue and first tried changing the max_template_date, but that didn't help. Then I re-ran both download_pdb_mmcif.sh and download_pdb_seqres.sh yesterday. But the error persists, mmcif_files/6ek0.cif...
> I am experiencing the same issue and first tried changing the max_template_date, but that didn't help. Then I re-ran both download_pdb_mmcif.sh and download_pdb_seqres.sh yesterday. But the error persists, mmcif_files/6ek0.cif...
> Hej @Maiya19724, Thanks a lot for our help! Sadly, this is not the missing file - 6ek0 (with a zero) is not in the pdb ek-folder. > > >...
same error
> The second error is windows specific, not CBLASTER (I think) - can you try linux? If there is a workaround please let me know, I had to get a...
Thanks a lot for your help!
Hi @jaebeom-kim, 1. **Missing SAR11 / SAR86 in my marine MAG test** * Workflow: I ran **[metabuli@ed609df](https://github.com/steineggerlab/metabuli/commit/ed609df)** with **default parameters (`--seq-mode 1`)** on a **marine MAG reference set**, using your...
Thank you for the quick and clear response! Question 1 So the **Metabuli GTDB r214 database** is *not* a 1-to-1 mirror of the official GTDB r214 release, correct? * Can...
In my understanding, Metabuli outputs Kraken-style report. To get a relative-abundance table with Bracken, you first need a Bracken-formatted database that matches the Metabuli DB. Building that Bracken DB requires...
It looks like the server is totally down today. Can you check if you're still able to access it? @diaorao