Maithy15

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Hi Vadim, Thanks for your response. Just to be clear, do I need to create a FASTA database with peptides generated from my enzyme of interest, use --cut disable digestion,...

@anesvi Sorry for not updating! The XML.tmp files were there. I restarted after cleaning the folder and it worked! Thanks Maithy

Not a single file is written, including the log.

Thanks for the prompt response. I will upload the log from the current run as soon as it ends.

Hi Vadim, Here is the log file. Thanks for the help. Cheers, Maithy [06_15_2024 10_51_28.txt](https://github.com/user-attachments/files/15937383/06_15_2024.10_51_28.txt)

May I email you? Could you please give me your email ID?

Hi Vadim, Thank you so much for figuring the problem out. I have one more qiestion. I got two outputs named phospho with 90 and 99. Are the numbers localization...

That was super fast! Just for me to understand, do you recommend to be this stringent? is it possible to set a different value like 0.75 for the output?