CJ

I tested on another data set with chromosomes lengths below the limit. KaryoploteR cannot use csi index it seems.

Hi @Faewks, I wanted to do the `kpPlotBAMDensity`. So with large genomes I would use Bedtools, then import the data into R and make a custom kpPlotBAMDensity. That worked very...

Hi Faewks, I looked into the function kpPlotBAMDensity in order to make images like this:  You can find the source code for kpPlotBAMDensity here: https://rdrr.io/bioc/karyoploteR/src/R/kpPlotBAMDensity.R I made a custom...

Did you ever find a solution to this? Because I am running into the same issues.