MagdalenaFeldhahn

FATAL_ERROR: Can't determine consensus pair orientation of read group

15

Hi. We observe the error listed below when trying to call somatic SVs with our manta pipeline. The pipeline usually works fine, we observe this error for the first time....

Manta crashes on unmapped mates during generation of evidence bams

5

We have run into an issue with Manta 1.4.0 that is connected to unmapped mates. We have traced it as far as we could: Given a read with unmapped mate...

Slightly different results when applying rtcr to the same dataset twice?

1

Hi, for some pipeliene tests we run rtcr several times on the same fastq input files. We noted differences in the reconstructed T-cell clones. The differences mainly affect clones with...