MCH74

Dear Juan, I am having exactly the same problem with the majority of my 800+ jobs. Have you been able to find a solution? Thanks, Mark

I wrote that too soon. Also when running on one core, it eventually throws a segmentation fault. Although in each case it produces sensible output before it crashes

I have changed my command slightly to: ../spaln -Q7 -O1,2 -t20 -M1 -dPH_PH_racon_pilon_pseudohap_masked uniprot_arth_blattodea.faa > spalnout but now, after it runs successfully for some time, I am getting the following...

Dear Osamu, Thank you for your tips and comments. I have been running several jobs in parallel on 1000 different segments of the protein file, which works in 9 out...