LysSanzMoreta

Results 22 comments of LysSanzMoreta

pip install cannot build wheels

@jamesmkrieger I am still having the same issue, with **ProDy versions 2.0.0 and higher** I am trying to upgrade my environment to python 3.8 ``` Python 3.8.13 Pip version 21.2.2...

pip install cannot build wheels

@jamesmkrieger Thanks for your reply. I am using Ubuntu 20.04.4 LTS. I will try conda as soon as I can.

pip install cannot build wheels

@jamesmkrieger `conda install -c conda-forge prody` seems to work, but the pip installer is broken. Thanks for the help!

URGENT: Need more info: Ancestral sequence reconstruction

Thanks, I can try to investigate the .p file in the output, because the rest seems the same as I did

Feature Request: Guidelines on implementing Sparse GP in Numpyro

@jejjohnson Thank you very much! I also made a little implementation in pyro ( I switch back and forth heheh), your example will be very useful to check if I...

pip install cannot build wheels

@jamesmkrieger `pip install prody==2.3.0` worked on Ubuntu 20.04.4 LTS with python 3.8.13

pip install cannot build wheels

Worked in `python 3.8.13`! However I was feeling adventurous and I tested it on `python 3.9.12 `and it could not install the wheels.

pip install cannot build wheels

@SciKidSirish My recommendation is to downgrade python to 3.8 or so, most bioinformatic tools are still behind python updates

RuntimeError: one of the variables needed for gradient computation has been modified by an inplace operation: [torch.cuda.FloatTensor [4, 512, 16, 16]], which is output 0 of ConstantPadNdBackward, is at version 1; expected version 0 instead. Hint: enable anomaly detection to find the operation that failed to compute its gradient, with torch.autograd.set_detect_anomaly(True).

I was trying to modify a tensor using a boolean mask inplace a tensor : out[mask] = 0 so I just transformed the mask to integers and did element wise...

Request for more masking tutorials

@fritzo I am particularly puzzled about this _Why when i) using the context manager poutine.mask it shows under the "mask" in the trace the used mask tensor and when ii)...