Luke Sikina
Luke Sikina
``` [ERROR] error reading /home/luke/.m2/repository/batik/batik/1.5/batik-1.5.jar; java.net.URISyntaxException: Illegal character in path at index 47: file:/home/luke/.m2/repository/batik/batik/1.5/\ [ERROR] error reading /home/luke/.m2/repository/batik/batik-rasterizer/1.5/batik-rasterizer-1.5.jar; java.net.URISyntaxException: Illegal character in path at index 58: file:/home/luke/.m2/repository/batik/batik-rasterizer/1.5/\ ``` This dependency...
- [x] Get Pim's Spring Boot PR building on Java 17 - [ ] Get Spring Boot PR running on Java 17 - [x] Fix MyBatis version - [x] Fix...
- Documentation for stable release - What's stable - Cadence - Current stable release
This should be done once we're happy with the state of 5.x - [ ] Update the image used in the cbioportal-docker-compose repo - [ ] Remove references to java...
**Environment**: fresh cbioportal-docker-compose setup, v3.7.9 **Gene Panel**: datahub/reference_data/gene_panels/data_gene_panel_RMG.txt **Error output**: ``` ./importGenePanel.pl --data /data_gene_panel_RMG.txt Reading data from: /data_gene_panel_RMG.txt Warnings / Errors: ------------------- 0. Could not find gene in the database:...
**Background**: The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a multitude of sources such as published research papers,...
Problem: - The genome-nexus-annotation-pipeline project imports the `core` cbioportal artifact for MAFUtil. This means that any time we make a change to what SLF4J logging impl we use in the...
Fix #9775 - Remove simple-slf4j logging impl from tests to unify logging - Add logback artifact to scripts pom - Add logback config to core and scripts