Lucas F Maciel

@shenwei356 thank you for your reply. I'll try your instructions and check the KMCP as well. Best,Lucas

Tried v 0.5.0 but the script is not finding the db ``` enrichm data [2021-05-26 17:06:18 PM] INFO: Command: ~/miniconda3/envs/enrichm_5/bin/enrichm data [2021-05-26 17:06:18 PM] INFO: Running the data pipeline Traceback...

@jsgounot the version 0.5.0 came with Python 3.6.13 in the conda env. I manually modified the script data.py as indicated by #103 but I'm worried that something else might be...

Thanks for your fast reply. I'll work on that ;) When you say shortly, do you have any estimation? Just so I can have an idea. Thanks again.

Hi @pati-ni Here is a bit more of the code after running harmony ``` dimensions

From what I understand FindClusters performs graph-based clustering on the neighbor graph that is constructed with the FindNeighbors function (which I used the harmony reduction). There is no reduction argument...

Hi @njbernstein I'm using scanpy version 1.10.2 and when I tried to run hashsholo but it's not working and I'm not sure why  Any suggestions? Thank you Edit: htos...

Trying to install in other machine I've got other errors `Traceback (most recent call last): File "/home/ABTLUS/lucas.maciel/anaconda3/envs/AMON/bin/amon.py", line 74, in main(kos_loc, output_dir, other_kos_loc, detected_compounds, name1, name2, keep_separated, samples_are_columns, File "/home/ABTLUS/lucas.maciel/anaconda3/envs/AMON/lib/python3.8/site-packages/AMON/predict_metabolites.py",...

@Tim-Sto, to tell the truth, I still don't really understand why but I was able to make it work. if you try to run like 10 times the same input,...

Hi, I'm also trying to use the tool and facing several problems as well. I had to turn-off hashedDrops, Demuxem and BFF because I was having problems with the code...