LouisFaure

I am tacking the liberty of bumping this PR, as I have added GPU support for `sc.pp.pca` on the latest commit! (had to force push it to fix a big...

Thanks for your comments, I understand the struggle of implementing CI for GPU code! @Zethson here are my answers to your questions: 1. Instead of checking if a gpu is...

For those interested in using the GPU accelerated functions leiden, draw_graph_fa, I have made them available on the following gist: https://gist.github.com/LouisFaure/9302aa140d7989a25ed2a44b1ce741e8 I have also included in that code `load_mtx`, which...

@Intron7 I think the aim here is indeed to not keep anything in VRAM anyway. In the code/functions I propose here, the data is only transiently stored in device memory...

Here are some updates: - `_fuzzy_simplicial_set` from umap has been freshly exposed in the nightly version of cuml 22.06 (stable should be there in the coming weeks), so I did...

In case this helps, all gpu accelerated code implemented in scanpy use rapids related packages, which can be easily deployed by using their [docker images](https://hub.docker.com/r/rapidsai/rapidsai-core) and are updated on a...

@maarten-hifibio in the mean time if you need it I have just made some GPU wrappers available on the following gist: https://gist.github.com/LouisFaure/9302aa140d7989a25ed2a44b1ce741e8 It includes one for leiden that would exactly...

Great I am looking at it now, RSC package looks very nice!

Hi @vitkl, SimplePPT or Elpigraph tree algorithms could quite capture the whole tree. The question is whether all segments of the tree is explained by cellular differentiation. If that is...

Hey @aeaton-overleaf, I have tried to build an image for mac m1, but got stuck during the run of command `make build-community`. I get the following error: ``` #14 0.465...