Louis-Mael Gueguen

Well I set up the braker pipeline on another machine with sudo access as I am in a hurry. I thought about it indeed, but the gmhmme3 did not yield...

Update @tomasbruna : Because the command did not show any error I decided to give my script another try, and this time I got the following (did not change anything):...

I am having the same error with checkM 1.2.2 (in a singularity). The Dockerfile I intended to use (and push here): ``` FROM ubuntu:latest ENV DEBIAN_FRONTEND=noninteractive RUN apt-get update \...

We installed `libncursesw5-dev`, still isn't working (with samtools 1.3 and 1.9). Same error message. Samtools does not work as a standalone, the problem is definitely on this side.

We found a way to make it work, installing ncorses _before_ samtools in the conda environment. The order must mess with the versions. Or soemthing else, anyway it works. Final...

On a side note, I tried starting again the run several times. kmdiff restarts by processing the partitions and can complete the process, but with different results as shown here:...

I got the same error. The location of the file was correct, the name of the file `database150mers.kmer_distrib` was correct. I could circumvent this by downloading the file bracken and...

It did work, thank you ! But I feel like a flag would be more straightforward. Feels a bit overkill too.

I'll try to contribute when i find the time !

I faced the same error several times: ``` 025-09-07 00:32:23 vls15-slurm.compbio.ulaval.ca SemiBin2[3283485] INFO Training model and clustering for sample "SRR3187095_scaffolds" 2025-09-07 00:32:23 vls15-slurm.compbio.ulaval.ca SemiBin2[3283485] INFO Start training from a single...