LongpanICR

@ShixiangWang ,Hi Shixiang, Sorry for late reply. In fact, I just compared the result from TCGA pancan project (https://gdc.cancer.gov/about-data/publications/pancanatlas, ABSOLUTE purity/ploidy file - [TCGA_mastercalls.abs_tables_JSedit.fixed.txt](http://api.gdc.cancer.gov/data/4f277128-f793-4354-a13d-30cc7fe9f6b5)) with the results generated by Doabsolute...

Thank you, shuai! I tried one case. However, it seems that it doesn't work well. In the normal tissue, I find only 10 variants while there are 35 variants from...

Hi shuai, fully agree. Then only using SpecHLA, one tools to get all the HLA infomation (genotype, mutations and LOH) is wonderfully, especially for cancer genomics. Taking into account the...

Hi Shuai, I kindly ask the progress of script to detect the somatic mutations between two samples. Hope it will not bother you. Before your code is released, I also...

Hi, The following is the updated info: I did a test and only extract 3000 cells. So the adata file is only 3000 x 35125. Then I re-load the file...