LogCrab
LogCrab
I encounter the similar `CallProcessError` in the latest version 0.3.15 and this problem can still be solved by the forementioned `bcftools view -c 1`. But alter `bcftools view -c 1`...
I solve this by shuting down multiprocessing (`--cpus "0"`) using the following command ```bash postprocess_variants --cpus "0" --ref "/input/GCA_000001405.15_GRCh38_no_alt_analysis_set.fasta" --infile "/tmp/call_variants_output.tfrecord.gz" --outfile "/input/{OUTVCF.gz}" ``` But I still not sure what...
@lucasbrambrink Thank you for you response, I do kept those files but there are 16 of them, listed as below ``` call_variants_output-00000-of-00016.tfrecord.gz call_variants_output-00001-of-00016.tfrecord.gz call_variants_output-00002-of-00016.tfrecord.gz call_variants_output-00003-of-00016.tfrecord.gz call_variants_output-00004-of-00016.tfrecord.gz call_variants_output-00005-of-00016.tfrecord.gz call_variants_output-00006-of-00016.tfrecord.gz call_variants_output-00007-of-00016.tfrecord.gz call_variants_output-00008-of-00016.tfrecord.gz...
@lucasbrambrink The file you requested is sent to your email just now.
@lucasbrambrink Sorry the the dealy. My machine is running Ubuntu 22.04. The `cat /proc/version` output is `Linux version 6.2.0-35-generic (buildd@bos03-amd64-016) (x86_64-linux-gnu-gcc-11 (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0, GNU ld (GNU Binutils for Ubuntu)...