LiyanJi

invalid class “ScoreMatrix” object

1

**## When I run the code as below, I got an error. Could you help me deal with the bugs? Thanks a lot.** data(cage) data(promoters) scores1=ScoreMatrix(target=cage,windows=promoters,strand.aware=TRUE, weight.col="tpm") library(GenomicRanges) covs =...

Error in (amed + 1):(bmed - 1) : result would be too long a vector

2

Hi, when I run ReadDepth on WGBS data, the errors appeared: Error in (amed + 1):(bmed - 1) : result would be too long a vector Calls: new ... binParams...

Problem when running BisulfiteGenotyper

1

Hi, I'm running bis-snp when using the command: java -Xmx10G -jar BisSNP-1.0.1.jar -R hs37d5.fa -I header.sort.mdups.bam -D 00-All.vcf.gz -T BisulfiteGenotyper -vfn1 header.sort.mdups.cytosine.raw.vcf -vfn2 header.sort.mdups.snp.raw.vcf -C CG,1 -C CH,1 -out_modes EMIT_VARIANT_AND_CYTOSINES...