Li Xing
Li Xing
```python from affiliation_parser import parse_affil affil_text = "Department of gynecology and obstetrics, university hospital of South Reunion Island, BP 350, 97448 Saint-Pierre cedex, Reunion; Faculty of medicine, university of Reunion,...
```python from affiliation_parser import parse_affil parse_affil("School of Humanities and Social Science, The Chinese University of Hong Kong, Shenzhen, Longgang District, Shenzhen, P. R. China.") {'full_text': 'School of Humanities and Social...
An example: 2 Department of Pediatrics, Med. Fac. Semmelweis Univ., Tüzoltó u. 7, H-1094 Budapest, Hungary. [email protected] https://semmelweis.hu/english/faculties/medicine/departments-aok/2nd-department-of-paediatrics/
from NCBI's doc, email is always the last element in affiliation, split by ' ' and check whether the last one is a email could get a more accurate result...
KEGG made its database private in 2011, so is KEGG annotation version in emapper db updated since then?
prot.accession2taxid.FULL has only 2 columns， while prot.accession2taxid has 4 cols， how can I format NR using prot.accession2taxid.FULL
fix #7
``` wind = px.data.wind() px.line_polar(wind, r="value", theta="direction", color="strength", line_close=True, color_discrete_sequence=px.colors.sequential.Plotly[-2::-1]) ``` AttributeError Traceback (most recent call last) in 2 3 px.line_polar(wind, r="value", theta="direction", color="strength", line_close=True, ----> 4 color_discrete_sequence=px.colors.sequential.Plotly[-2::-1]) AttributeError: module...
since there are tools like mathtools, renaming it and put Location to tools dir will make code more organized.
By default, dnachisel gives a 'best' sequence with score close to 0. I can get a 'worst' sequence by `new_score < score`. If i want a 'medium' sequence , i...