Alexei Martsinkovskiy
Alexei Martsinkovskiy
For example, using gb.update_or_add_submission(assignment, student, **kwargs) will succesfully add a submission if it isn't there. However, it will not actually update a submission if it is already present. For example,...
Hi, So I'm not sure if this is a bug or not. However when I run GRN on a large dataset, GRN completes the infer partial partitions, then restarts and...
Hi all, When running hmmratac for one of my samples, using --cutoff-analysis-only, I get this message: "ValueError: adjust --means and --stddev options and re-run command." I'm not sure if this...
The mamba solver is much faster than the default conda solver and would likely speed up the building environment step. Is it possible to support at least a toggle for...
This has already been mentioned in #143 for example, but I just wanted to formalize this as an open issue to make sure it comes to the attention of the...
Torch neuron is a PyTorch architecture that enables it to use AWS based Trainium and Inferentia gpu instances. Since these are somewhat cheaper, especially for large models that may be...
Hi all, Thank you for the great package. I'm unclear of one thing, which is how to interpret data when one bar is colored as significant vs when both are...
Hi all, I had another question! Is it worth subsampling single cell objects when you have uneven cell numbers in conditions? Basically our experiment has 5 conditions: primary tumor(pt) --...
When I run netVisual_heatmap on a merged object, it throws the following error: ``` Do heatmap based on a merged object Error in grDevices::col2rgb(colors): invalid color name 'Reds' Traceback: 1....
For example, I can't figure out how to use segmentation algorithms with squidpy with the images stored in the spatial data. I know I can load these images in straight...