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Yes, but I just left the lab, I send it to you Monday morning ! Thank you for this extremely fast answer ! Best, Charles Le ven. 9 déc. 2022,...
Hello, The inputs names are acqparams.txt, b0.nii.gz, T1.nii.gz and the full output is: The full log is attached [log.txt](https://github.com/MASILab/Synb0-DISCO/files/10211956/log.txt)
I work with Mac Terminal, in a directory where I put INPUTS (with the 3 files needed) ands OUTPUTS (empty). I have a 7T anatomical T1 wheighted 3D file processed...
In OUTPUTS I get the T1_mask, norm, norm_lin, norm_nonlin, the b0_d_smooth and the 3 ANTS files. So files look to be readable
Ok thank you a lot. First time I run this pipeline. Yes the skull stripped file look good and the b0 is smoothed. I will try another machine to make...
Do you have a sample dataset I can use to test with my setup?
Hello again ! I reinstalled my Docker configuration but I get stuck one step later. The T1 is now readable but the process crash while FAST segmentation is being processed....
This is my T1.nii.gz image. I will test it with the dataset, thank you !!!
Hi, Finally, it works! I would like to thank you so much for your help and provide feedback if it helps anyone. I ran it with 2 example datasets, and...