YuciWang99
YuciWang99
Hi, I have the same problem even after updating the deeptools to 3.5.5 `alignmentSieve --numberOfProcessors 40 --ATACshift --paired --bam POOL-2.marked.rmDup.rmMulti.bam -o POOL-2.tmp.bam` Size of 'POOL-2.marked.rmDup.rmMulti.bam' is 2.6G and 'tmp.bam' is...
I found that 'tmp.bam' file had fewer reads. The tail of 'tmp.bam' seems strange. Is that a problem? > samtools view POOL-2.tmp.bam | tail -n 20 [E::bgzf_read_block] Invalid BGZF header...
Hi. Another information is that 5 of 6 my sequencing BAM files ran successfully. Only 1 file faild. I think it is not a general problem but a specific one....
BS3 is baed on python2, not python3.
It works for me too! brilliant!