Lee Kamentsky

Re 1.10 - some things that were previously deprecated now have different behaviors or fail. Most notably: ``` import numpy as np x = np.zeros(5, np.float64) y = np.zeros(5, np.int32)...

This one is pretty clear: The measurements XML file has an XML element, , which gives the location of the image index file. CPA correctly parses out the name, "2013-10-16T091253Z[1157]/ImageIndex.ColumbusIDX.xml"....

I think in this one case, it might not take too much work to scan the columns in the per-image table for "Image_Metadata" even if that's a bit of a...

For the [BIDS spec](https://bids.neuroimaging.io/) one thing that's being discussed is a hierarchy with inheritance. The root might have things that are in common, like the microscopy setup part of the...

If this issue needs a champion, I think I can make a case for taking on this work (@jmswaney above was part of our lab). @jakirkham I'm not sure if...

My use case for JPEG2000 is grayscale 3D stacks of JPEG2000 planes and my plan was to JPEG2000-encode each of the planes separately (and for 4 and 5D, stack over...

I think it's not. I started work on the codec, have had to pause it recently.

Hi Aohui, I just checked in a fix, but I don't have Windows, so cannot test it. Can you try installing javabridge like this: pip install ***@***.*** If that works...

Currently, the OMERO module doesn't store the password - it prompts the user with a dialog box. I'd hoped that there would be some sort of identity-based authentication that could...

Hey Sebi, Easy fix. It looks like Bio-formats has improved their support for CZI and you can use their new Jar in python-bioformats. I got bioformats_package.jar from here: http://downloads.openmicroscopy.org/bio-formats/5.0.2/artifacts/bioformats_package.jar I...