LauraVP1994

Can not fully use GPU?

8

Dear, I have been using Beast to make a phylogenetic tree from 250 influenza samples. Recently I had the chance to use GPUs to let this process go faster, however,...

Dear, I am using bowtie2 and SPADES for the de novo assembly of avian influenza viruses of variable concentrations (sequenced with Illumina MiSeq). Avian influenza genome consists of 8 separate...

Get PubMed metadata from large amount of articles

3

I have a few questions regarding this tool. I have a query that results in 124 575 hits with `pubmed_search

Collapse selected nodes doesn't do anything?

1

Dear, After selecting several nodes with the shift, I want to do "Collapse selected nodes", however nothing happens? Is this normal? Thank you Laura

ShoRAH: Illumina reads ; influenza

7

Dear, I am very interest in using your tool for my project. I'm working on influenza reads that were sequenced with Illumina MiSeq. I was able to extract quasispecies with...

Hello, I'm using the following command to find the closest references for multiple reads. As both the database and the fasta file are quite big, it takes quite some time....