Kyle Ferchen

Can you please explain how the motif PWM files can be linked to TFs? I had thought that the PWM files were named by the motif id field in the...

Thank you for clarifying! However, I'm wondering why I can see some examples like cisbp__M08984 in the motif2tf file, which doesn't seem to have a pwm file in the "singletons"...

I am still getting this error as of 2024/10/07: ```BASH >>> gears_model.load_pretrained('./model_ckpt') Traceback (most recent call last): File "", line 1, in File "/users/fero3l/env/gears/lib/python3.10/site-packages/gears/gears.py", line 257, in load_pretrained self.model_initialize(**config) TypeError:...

I have almost same issue using Ubuntu 20.04. In addition, the giggle index program can only read the file if the execution is in the directory with the file for...

Yes, like I said, I tried *.gz with and without single or double quotes and none had worked. I am using bash on Ubuntu 20.04: GNU bash, version 5.0.17(1)-release (x86_64-pc-linux-gnu)...

> Try these options as well: > > * escape the asterisk with a backslash (eg. `\*.gz`) > * in a bash script: precede the giggle index step with `set...

> also here's a little test script that summarises the different behaviors of strings with the glob expansion asterisk. This will tell me whether glob expansion is even the real...