KunFang

Hi, I met with the similar issue: ``` Traceback (most recent call last): File "/Applications/PyCharm CE.app/Contents/plugins/python-ce/helpers/pydev/pydevconsole.py", line 364, in runcode coro = func() ^^^^^^ File "", line 1, in File...

Hi @ArtRand Happy new year. I have modbam files generated by DNAScent, which currently seem to be incompatible with modkit. I was wondering if it might be possible to consider...

> Hello @KunFang93, > > I can get this to you soon, it's on the roadmap. Got it, thank you so much!

> @KunFang93 Any chance you'd be willing to send me that fill SAM record so I can use it for testing? I can make one up, but better yet to...

Hi @ArtRand Thanks for your reply! Somehow I don't receive your email. Do you mind cc to kf2799[at]cumc.columbia.edu? Or go over here also works for me. Best, Kun

Not developer but these code works for me ``` modkit bedmethyl tobigwig foo.bedmethyl --mod-codes h -t 40 -g sizes.genome foo.bigWig ``` where sizes.genome something like ``` chr1 248956422 chr2 242193529...

Thanks! The code I tried is from example code show in GitHub page under Modified basecalling section, I am not sure why it cannot automatically refer to model works for...

Thanks for your suggestion! I will try it. Looking forward to seeing the new tricks in old functions :)

Hi, I would like to report that I encountered same error with the error below: ``` ERROR ~ Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:CUSTOM_DUMPSOFTWAREVERSIONS (1)' Caused by: Process `NFCORE_CUTANDRUN:CUTANDRUN:CUSTOM_DUMPSOFTWAREVERSIONS (1)` terminated...

I worked around it with downgrading singularity to 3.6.3 and used -r 3.2.1