Krithika B

Which GrCh38 reference file to use ?

1

Your documentation says to use "hg38 reference without alt contigs". Could you provide a link to which reference genome file you used ? I would like to try the same...

Can we plot SNPs on a circos plot ?

3

Is it possible to plot single nulcletotide polymorphisms (SNPs) on a circos plot ? A SNP has the same start and end position. For example, 1:207620289 (rs12081383) 1:207624395 (rs72644189)

How to plot SNPS

1

Is it possible to plot single nulcletotide polymorphisms (SNPs) on a circos plot ? A SNP has the same start and end position. For example, 1:207620289 (rs12081383) 1:207624395 (rs72644189)

The plots are very beautiful ! Wondering if you a example of how to do these plots on voom-limma normalized data ?

### Description of the bug Reference to this: https://github.com/nf-core/hic/issues/71 Hello ! Reopening this issue . I'm using nf-core/hic v2.1.0-gfe4ac65 on our HPC and when i use this setting , the...

How to run enrichment analysis of metabolites using clusterProfier

4

I have a list of metabolites, In the form of metabolite names, and also in the form of KEGG Ids. How can i run enrichment analysis on this data ?...

Website down ?

1

Hello , the web server seems to be down: http://scflux.org/. When will it be back up ?

Dear Deeptools authors, I'm looking for some advice. I'm looking to plot a heatmap similar to panel D in this figure: https://ars.els-cdn.com/content/image/1-s2.0-S2211124720302989-gr1_lrg.jpg The signal on the top panel (the “grey...

I want to plot average profile of all my samples in one image. I used the code like this and got an image like this , very similar to tutorial...