Alexander Kleinjohann

Error in instantaneous rate when passing a 1-dimensional kernel sigma [Bug]

1

**Describe the bug** When passing a more than 0-dimensional `sigma` in the generation of a kernel and using said kernel to calculate the instantaneous firing rate an error is raised...

Array-annotate Amplitudes and PCs in PhyIO

2

PhyIO was written before array_annotations were fully functional, so it had TODOs in the comments to deal with data which should be array_annotated once that's possible. I added array_annotations for...

PhyIO automatically loads csv files in the data folder, but assumes that they only have two columns. This causes an error e.g. when loading a SpikeInterface folder with quality metrics...

If a `container.filter` only returns `SpikeTrain` objects, they are returned as a `SpikeTrainList`. https://github.com/NeuralEnsemble/python-neo/blob/345d3392ee443994b8de58731cc9459e5308ff11/neo/core/container.py#L89-L90 The initialisation of this list overwrites the original parent links, causing the following behaviour: ``` import...

fix: Wrong linenumbers reported when linting

2

This PR addresses two issues that led to incorrect linenumbers reported when running `snakemake --lint`. 1. If an error was encountered in `--lint` mode, the stacktrace wasn't cut to remove...

Unable to connect in a proxy setup with path prefix

1

I'm running a crate cluster behind a proxy which forwards `https://my.proxy:443/crate/` to `internal.crate.hostname:4200`. This requires me to prepend `/crate/` to all paths which does not seem to be possible in...

Add Code Examples in Docstrings to CI Workflows

1

While implementing #800 I noticed some examples in function docstrings were not changed when the API of those functions changed. Currently examples in docstrings seem not to be tested at...