Khyati-Microcrispr

I also tried biorex and I am getting this error : bash scripts/run_test_pred.sh Converting the dataset into BioREx input format 2024-05-04 16:58:56.713845: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You...

Hi, thank you for debugging. I am using the NVIDIA GeForce RTX 4090 GPU on Ubuntu 22.04, while your team used the NVIDIA Tesla V100 SXM2. Could you please tell...

Hi again, I am now using Gcloud, Cuda and other setups are working fine. I am still getting " File not found" and "Logits error" by using exp and pred...

Hi, I downgraded the transformer version to 4.18.0 because TFtrainer was not getting imported. I tried all way to import it but it only supports older versions. On Wed, 15...

Hi, could you please run the prediction script and check if it's working?, I have tried everything I can but it's not working, please provide an input file for prediction...

Ok, thanks for the update. On Tue, 21 May 2024 at 8:07 PM, Po-Ting Lai ***@***.***> wrote: > Hi, I will try the setting again and provide you with an...

Hi, Thank you so much for the update, both training and prediction scripts finally worked. On Wed, 22 May 2024 at 19:07, Po-Ting Lai ***@***.***> wrote: > Hi @Khyati-Microcrispr ,...

python = 3.7 absl-py==2.1.0 AmberUtils==21.0 astunparse==1.6.3 attrs==24.2.0 backcall==0.2.0 bioc==2.0.post4 blis==0.7.11 cachetools==5.5.0 catalogue==2.0.10 certifi @ file:///croot/certifi_1671487769961/work/certifi charset-normalizer==3.4.0 click==8.0.4 cycler==0.11.0 cymem==2.0.8 debugpy==1.7.0 decorator==5.1.1 edgembar==3.0 emoji==2.12.0 entrypoints==0.4 filelock==3.12.2 flatbuffers==24.3.25 fonttools==4.38.0 fsspec==2023.1.0 gast==0.3.3 google-auth==2.36.0...

please help, I have sent the library versions in my envionment, can you tell me cuda and cudnn versions?

Hi, can I know how many papers have you processed? Using FTP I was only able to get relations for 9 million papers. On Wed, 5 Jun 2024 at 22:50,...