Zarathustra
Zarathustra
Trying to prevent cobra from prefixing my identifiers when writing SBML, I got this (using the textbook model, model history error is unrelated): `cobra.io.write_sbml_model(model, 'test.xml', f_replace={})` ``` Error encountered trying...
in the SBML model (e_coli_core), if I set the extracellular species as a boundary species (e.g. for kinetic simulation), and then load the model to cobra, even though the exchange...
most reactions map as follows (id, BiGG annotation in the model): R_ENO: ENO but for the biomass reaction it maps as follows: R_BIOMASS_Ecoli_core_w_GAM: Ecoli_core_w_GAM I think the BIOMASS part needs...
## Problem The current use of metaclasses as a registry of classes is cumbersome at at best, and more often problematic. Currently we resort to the use of `setup_class` (sometimes...
example CI run: https://github.com/valory-xyz/open-autonomy/actions/runs/3330004683/jobs/5508153905 This fails only on windows because it does not raise a [`TimeoutException`](https://github.com/valory-xyz/open-autonomy/blob/9c71dc092e68de94bd7614fd0fac492185e272fb/packages/valory/skills/abstract_round_abci/behaviour_utils.py#L117-L118). https://github.com/valory-xyz/open-autonomy/blob/9c71dc092e68de94bd7614fd0fac492185e272fb/packages/valory/skills/abstract_round_abci/tests/test_behaviours_utils.py#L1260-L1265 [failure.log](https://github.com/valory-xyz/open-autonomy/files/9870984/failure.log) I also wonder why we have implemented a custom error, and do...
Right now in e2e test for registration start up we exchange tendermint configurations, update the genesis file, and restart the tendermint nodes. However, since Tendermint is already running prior to...
We should not assume that the order of tendermint node names and agent addresses retrieved from the on-chain service registry correspond. Relates to this comment: https://github.com/valory-xyz/open-autonomy/pull/1323#discussion_r967419426 https://github.com/valory-xyz/open-autonomy/blob/4e09f8da543741970be5ec81c91d7b5a81871ab8/packages/valory/skills/registration_abci/behaviours.py#L292-L312
L.S. for the uninitiated: `synchronized_data_class` is a class attribute present on specific rounds (references below). Why does this even exist? It is a very confusing feature without any documentation as...
It will better to not task a developer with assigning each timeout manually in the setup of the [`SharedState`](https://github.com/valory-xyz/open-autonomy/blob/48e6806ec638f8debc5deb4144e3612dbe49578e/packages/valory/skills/oracle_abci/models.py#L62-L113). We should abstract this away as this can happen completely automatically...
``` 2022-12-02T10:39:17.3162409Z =================================== FAILURES =================================== 2022-12-02T10:39:17.3216448Z __________ TestHelloWorldABCIFourAgentsCatchupOnRegister.test_run[4] ___________ ``` for all agents looks as follows: ``` agent_00001 period: 0 round: registration event: Event.DONE agent_00001 period: 0 round: collect_randomness event:...