Karimi-81

Results 6 comments of Karimi-81

Thank you. I used the above commands but the issue was not solved: [06/25/21 20:27:12]: Quality trimmed reads: ('fun/training/trimmomatic/trimmed_left.fastq.gz', 'fun/training/trimmomatic/trimmed_right.fastq.gz', None) [06/25/21 20:27:15]: R1 header: 1/1 and R2 header: 1/1...

Thank you. I corrected the headers as you suggested and it worked well.

I am sorry to interrupt you again but I got another error: [Jun 30 05:26 AM]: CMD ERROR: Trinity --SS_lib_type RF --no_distributed_trinity_exec --genome_guided_bam fun/training/hisat2.coordSorted.bam --genome_guided_max_intron 3000 --CPU 32 --max_memory 50G...

Thank you. The suggested solution worked well. Now, program runs smoothly. Best, ======================================== Karim Karimi Ph.D in Animal Breeding & Genetics Postdoctoral Fellowship in Mink Genomics Department of Animal Science...

Sorry to interrupt you again. I got another error: Constructing the graph... Threads = 16 Vertex length = 25 Hash functions = 5 Filter size = 68719476736 Capacity = 1...

Hi There, I also encountered with the same issue: WARNING:Scaffolds: Hub-hub contact for bin_id:9590 scaffold: ptg000031l/8_0 degree: 3 with bin_id: 9921 scaffold: ptg000031l/25_116 degree:4 ############## these cases could introduce problems...