Karsten Bach

C-SIDE without RCTD cell type estimates

1

HI, I am interested in applying C-SIDE to a dataset where I did the celltype deconvolution without a reference scRNA-seq dataset due to a lack of a good reference. From...

Bisque transformation not working

3

Hi I am struggling to get sensible deconvolution of bulk RNA sequencing data. It works perferctly fine on other pseudobulked scRNAseq but seems to perform poorly on bulk. So I...

Non overlapping scRNAseq reference data

1

Hi I was wondering whether the reference data sets need to be completley overlapping in terms of identified cell types? Or is it possible to have a certain cell type...