Jose Goncalves Dias

That one can be used to adjust the value for a certain region, but then again it will be a problem when looking for values that deviate from the pivot....

Now I understand what you mean. Yes, that will solve the color issue. I was overthinking, trying to have all at once. But I still have one issue. The local...

If you have `autoscale : local` and you define the `bicolor_pivot : mean` you will have: - global mean line (yellow) - pos and neg_color relative to the local mean...

This is the error message when trying to run flatfile-to-json: ``` at /Users/josedias/Documents/PhD_Cologne/projects/PopAmaranth/popamabrowser/bin/../src/perl5/Bio/JBrowse/ConfigurationManager.pm line 7. Bio::JBrowse::ConfigurationManager::__ANON__("\x{a}GFF3 parse error: some features reference other features tha"...) called at /Users/josedias/Documents/PhD_Cologne/projects/PopAmaranth/popamabrowser/bin/../src/perl5/../../extlib/lib/perl5/Bio/GFF3/LowLevel/Parser.pm line 195 Bio::GFF3::LowLevel::Parser::_buffer_all_under_construction_features(Bio::GFF3::LowLevel::Parser=HASH(0x7f879e42b7c0))...

[Ahypochondriacus_459_v2.1.gene.gff3.gz](https://github.com/GMOD/jbrowse/files/5538650/Ahypochondriacus_459_v2.1.gene.gff3.gz) [another_attempt.gff.sorted.gff.gz](https://github.com/GMOD/jbrowse/files/5538640/another_attempt.gff.sorted.gff.gz) [Ahypochondriacus_459_v2.1.annotation_info.txt](https://github.com/GMOD/jbrowse/files/5538641/Ahypochondriacus_459_v2.1.annotation_info.txt) The ‘annotation_info’ is the file having extra attributes that I want to add. The Ahypochondriacus_459_v2.1 is the original fully functional gff. And the another_attempt is the file...

I tried now with the simple configuration like you shown and it worked. I had it this way before which resulted in not showing any of the new attributes: ```...

Just to follow up here. I had the same issue, tried nonzipped VCF, and did not work anyway. Same error. @DevonDeRaad did you by chance change anything besides the VCF...

This is a guess here, but I believe it is because they are single-exon. Then, the merge option excludes everything single-exon

I would appreciate being able to see ALL unscheduled Tasks from the entire Vault. Currently, only already scheduled tasks (from the entire vault, yes) are visible. OR, if they are...

> Hello, @gerardbosch, > > this is available in 0.20.0. Please update and re-check. > > Hey, @Jungal10, that's an interesting suggestion. Could you create a separate issue and add...