JoshuaDanielRubin

Crash during vg mcmc

1

**1. What were you trying to do?** I was trying to use vg mcmc to infer haplotypes from a mgam file. **2. What did you want to happen?** I wanted...

--rsrs option crashes

4

I would like to use HaploGrep to classify a FASTA sample with respect to the RSRS, but the option does not seem to work. I get the error: `[classify, --in,...

new module: VGAN/HAPLOCART

2

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

Add new file for HaploCart and update README

1

Test input file for HaploCart. The input file is simulated single-end FASTQ from the rCRS reference genome.

Add new module vgan/haplocart

23

## PR checklist New Module vgan/Haplocart Closes #2152 - [ X] This comment contains a description of changes (with reason). - [ X] If you've fixed a bug or added...