Joseph Lalli
Joseph Lalli
Would it be reasonable to look to this paper for guidance? https://arxiv.org/pdf/1910.11555.pdf
A GFA to rGFA tool would be extremely helpful for my use case at the moment. At a minimum, I could use more information about how the SO value is...
Unstale-ify please - I'm currently trying to get a precise definition to make sure my intuition is correct ("
@rmccoy7541, With the release of the 1KGP genotypes, do you know someone in the consortium is working on phasing the calls? Do you all anticipate the phasing being performed by,...
I've reached out to you via email @rmccoy7541. For those who may be interested, I've taken the liberty of phasing the T2T dataset myself. The repository, describing the methods used...
Just wanted to say I've been experimenting with an end user hack to do something similar*, and I've seen the largest impact in accuracy from variants called around insertions. Reads...
Hi @glennhickey, I wonder if you are still planning to implement this feature? -Joe
Not a problem @glennhickey, I'm so grateful for the work you've put in. I just wanted to double-check, as I'm a few months out from putting together a manuscript comparing...
Understood. I agree about the dependencies! I'll copy your comment on the similar issue I created at Pangenie (https://github.com/eblerjana/pangenie/issues/62). Maybe you and Jana can help each other get behind one...
I am also encountering this problem, and have spent much of the afternoon debugging it. Specifically, I am getting numerous warnings along the lines of "warning[vg::Watchdog]: Thread 56 has been...