Jonathan Robinson
Jonathan Robinson
### Description of the issue: As identified by a user, [`MAR02517`](https://metabolicatlas.org/explore/Human-GEM/gem-browser/reaction/MAR02517) is currently associated to only the CTSA gene (encoding Cathepsin A, a serine protease). This reaction involves fatty acid...
### Description of the issue: The [memote](https://memote.io/) package provides a really nice standardized tool for evaluating the quality of a GEM, and has been used during the curation of Human-GEM...
### Description of the issue: HMR2 GPRs were updated with enzyme complex information (i.e., "AND" expressions) using a process that combined importing rules from other models (iHsa and Recon3D) with...
### Description of the issue: A user has indicated that transfer of methyl to MGMT's cysteine residue (represented by reaction [MAR09498](https://metabolicatlas.org/explore/Human-GEM/gem-browser/reaction/MAR09498)) leaves the protein unusable for any further reaction, and...
### Description of the issue: Each of the Animal-GEM repositories (Mouse, Rat, Worm, Fruitfly, Zebrafish) contain a "master script" (e.g., [`masterScriptMouseGEM`](https://github.com/SysBioChalmers/Mouse-GEM/blob/main/code/masterScriptMouseGEM.m)) that regenerates the model files for that species, using...
**Please describe the feature** When using the global search function or the explore feature, the GEMs are ordered alphabetically with Fruitfly-GEM selected as default. However, I suspect that the majority...
#### Current behavior: During discussion in #825, it was discovered that metabolite [MAM02053](https://metabolicatlas.org/explore/Human-GEM/gem-browser/metabolite/MAM02053c) was renamed in the model from `henicosanoic acid` to `heneicosanoic acid` in #518 (discussed in #491) since...