JiqiuWu

I had this error too, I use fasta file. Dose anyone know how to fix it?

I deleted the output folder with the code `rm -r test_virsorter/` but it didn't work, and got this feedback `wrapper_phage_contigs_sorter_iPlant.pl -f ~/jiqiuwu/data/test_vir.fasta --db 1 --wdir ~/jiqiuwu/data/test_virsorter/ --ncpu 4 --data-dir ~/jiqiuwu/softwares/virsorter-data`...

Hi Simon, I am so sorry for the delay. ```input_sequences.fna``` and ```input_sequences_id_translation.tsv``` are my /rds/general/user/hz4918/home/jiqiuwu/data/test_virsorter/fasta/ folder, nothing like ```_prots.fasta```. I just used these commands to install metageneannotator: ``` cd ~/miniconda/envs/virsorter/bin...

Hi Simon, I also installed metageneannotator by ```conda install --name virsorter -c bioconda metagene_annotator``` unfortunately, i got the same error and the same output. Many thanks, Jiqiu

Hi Simon, Yes, I got this in the error file ``` Can't locate Bio/Seq.pm in @INC (you may need to install the Bio::Seq module) (@INC contains: /public/home/jiqiu/.conda/envs/virsorter/lib/site_perl/5.26.2/x86_64-linux-thread-multi /public/home/jiqiu/.conda/envs/virsorter/lib/site_perl/5.26.2 /public/home/jiqiu/.conda/envs/virsorter/lib/5.26.2/x86_64-linux-thread-multi /public/home/jiqiu/.conda/envs/virsorter/lib/5.26.2...

Thank you so much! I copied the Bio folder to the following path by ``` cp -r ~/.conda/envs/virsorter/lib/perl5/site_perl/5.22.0/Bio/ ~/.conda/envs/virsorter/lib/site_perl/5.26.2/x86_64-linux-thread-multi/ ``` And then VirSorter worked. But i got an output like...

Thank you so much, Simon! Not only for VirSorter, but also other helpful tools on virome! Many many thanks!