Josh Burton

How do I use the diploid heuristic?

2

I noticed the new parameters `--diploid-heuristic` and `--diploid-heuristic-cache` in the new version of GraphAligner. This looks like a super cool feature and I'm excited to try it out - but...

Matching sequences align as 2 indels in paf CIGAR string

13

Hi, I'm observing an apparent bug in which AnchorWave produces paf output with a CIGAR string that reports perfectly matching sequences as containing a matching insertion and deletion. For example,...