Jim Whiting

Hi Brian, thanks for getting back to me. So the aim is to do some DAPC analyses using adegenet with a couple of goals. Firstly to do some population structure...

Hi Brian, Thanks for your advice. I was able to use the above to extract genotypes across vcfR chunks and split the jobs across all cores so it was substantially...

Hi Scott, thanks. I had originally intended to supply the R code for the shiny app but it dropped off my radar a bit so thanks for reminding me. My...

I agree I think that would be useful. What's the thinking in terms of how it might be presented? Would what you have in mind look something like the single...

Hi James, can you share a reproducible example, and if possible a handful of SNPs from your VCF file that reproduces the issue? Otherwise it's difficult to diagnose the issue....

If you could also share your full script that'd be helpful. In your question you're sharing the rownames of an object called test, but you're passing an object called vcf...

Hi James, I've had a look into this, genotype_plot() expects the popmap to be a data.frame object, not a tibble. This is obviously pretty arbitrary, and I think I'll add...

Hi Lore, The individual outputs are all individual ggplot objects so should be customisable in the same way that a normal ggplot plot is. For changing the y axis label...