Jie Wu

problem using shap_values()

1

When I train a randomforest medel and use shap, I got shap_values[0] with different shape as X_train: clf = RandomForestClassifier(n_estimators=200, random_state=42, n_jobs=-1) clf.fit(X_train, y_train) explainer = shap.TreeExplainer(clf) shap_values = explainer.shap_values(X_train)...

nucleus information lost after proseg

2

Hi, Thank you for developing this awesome tool. After I run proseg on my xenium results. I saw that many cells does not have nucleus inside in the proseg results....