Jia-Hua Qu

Hi, thank you for introducing Snakemake. I wonder how to combine batch task in HPC and Snakemake. Specifically, we need request the running time and CPU/memory when we submit a...

Hi, I found the default comparison is to FindAllMarkers, but I want to compare two certain groups or compare some groups to one same group. For example, there are five...

vignette ‘seurat’ not found

1

After installation of SCORPIUS and Seurat, I ran the code `vignette("seurat", package="SCORPIUS")` in an attempt to read one of the vignettes containing more elaborate examples, but there wasn't any vignette....

Is there the autoencoder function in the tidymodels?

3

We are very interested in using an autoencoder to reduce the dimension to input into a machine-learning model. We found this issue: https://github.com/tidymodels/recipes/issues/35. Did it mean that the autoencoder function...

What are the meanings of qvalue, rank, leading_edge and core_enrichment in the result of GSEA using clusterProfiler?

1

Hi, I used "gseGO_CC_result

How to generate gseaplots from the result of compareCluster gseaGO or gseaKEGG functions?

2

We have ran the compareCluster gseaGO or gseaKEGG functions and there were three groups. Now we want to generate the gseaplot2 from the result, but after we ran the codes:...

能否在热图与左侧的趋势线折线图之间的一列显示基因名？

5

希望能在最左侧显示趋势线折线图，同时在热图与左侧的趋势线折线图之间的一列显示基因名。谢谢！